15:45
ASM 2021 Phage and IBD
RobEdwards
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ABACBS Presentation 2020
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Why does paired end sequencing help assembly?
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illumina paired end sequencing
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Sanger sequencing
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Pacific Biosciences Sequencing
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Oxford Nanopore ONT Sequencing
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454 pyrosequencing
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What does it mean to sequence a genome?
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Introduction to Illumina Sequencing
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Ion Torrent Sequencing
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Genome Peek
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Introduction to k-mers
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Introduction on counting k-mers
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Counting k-mers with Bloom filters
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k-mer algorithms: Compare and Swap
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Bloom Filters
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Counting Quotient Filters
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Count Min Sketch
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CheckM for Genome Consistency
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BLAST 7 scoring gaps
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BLAST 8 Probability
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BLAST 9 E values
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BLAST 10 Algorithms
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BLAST 11 PSWM
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Central Dogma
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ESKAPE Pathogens
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Klebsiella Introduction
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Metagenome Binning
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Subsystems Introduction
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Subsystem Classification
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Subsystems How to Annotate Genomes and Metagenomes
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BLAST 6 scoring alignments
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BLAST 5 BLOSUM62
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BLAST 4 PAM vs BLOSUM
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BLAST 3 amino acid differences
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Assignment 1 solution
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BLAST 2 seed and extend
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BLAST 1
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Assignment 3
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Antibiotics 2 mechanisms of resistance
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Antibiotics 4 Resistance Timeline
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Antibiotics 5 resistance databases
Antibiotics 3 Role of HGT in antibiotic resistance
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Antibiotics 1 mode of action
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Assembly problems 1 ... repeats
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de Bruijn graph assembly for DNA sequences
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Overlap layout consensus sequence assembly approach
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Greedy Assembly of DNA Sequences
Naive DNA sequence assembly
An overview of DNA sequence assembly
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Definitions
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Steps In Genome Sequencing
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Assignment1
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What is genome sequencing part 2
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What is genome sequencing part 1
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Learning Outcomes
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Why we are going to use AWS in the course
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SSH Keys
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Start AWS Computational Genomics Image
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RobEdwards
RobEdwards
