Phenix Tutorials - Invidious

Phenix Tutorials

Welcome to Phenix! See Playlists for all of our videos by category.
PHENIX is a software suite for the automated determination of molecular structures using X-ray crystallography and other methods.
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25:48

Using AlphaFold predictions for structure determination (Tom Terwilliger)

Phenix Tutorials

Shared 4 months ago

285 views

22:30

Molecular Replacement and cryo-EM docking (Randy Read)

Phenix Tutorials

Shared 4 months ago

181 views

1:00:19

Refinement X-ray and cryo-EM (Pavel Afonine)

Phenix Tutorials

Shared 4 months ago

500 views

24:07

Ligand restraints (Nigel Moriarty)

Phenix Tutorials

Shared 4 months ago

158 views

39:20

Model Validation (Christopher Williams)

Phenix Tutorials

Shared 4 months ago

149 views

53:54

T. Terwilliger: Alpha Fold Changes Everything (IUCR 2023 keynote lecture)

Phenix Tutorials

Shared 1 year ago

2K views

10:02

Cryo-EM structure determination with AlphaFold using PredictAndBuild

Phenix Tutorials

Shared 1 year ago

1.2K views

10:07

X-ray structure determination with AlphaFold using PredictAndBuild

Phenix Tutorials

Shared 1 year ago

877 views

6:31

How to run AlphaFold prediction in Phenix

Phenix Tutorials

Shared 1 year ago

1.1K views

5:30

Structure determination with AlphaFold in Phenix

Phenix Tutorials

Shared 1 year ago

967 views

5:42

Running Emplace_local via ChimeraX

Phenix Tutorials

Shared 1 year ago

2.8K views

2:28

Running Phenix via ChimeraX: setup

Phenix Tutorials

Shared 1 year ago

1.3K views

6:19

Using Xtricorder and Xtriage from HKLviewer for inspecting TNCS, anisotropy and twinning.

Phenix Tutorials

Shared 2 years ago

270 views

10:19

HKLViewer demonstration

Phenix Tutorials

Shared 2 years ago

347 views

1:01:24

Tom Terwilliger: AlphaFold changes everything

Phenix Tutorials

Shared 3 years ago

3K views

14:31

HKLViewer demonstration

Phenix Tutorials

Shared 3 years ago

540 views

8:09

Using an AlphaFold model for molecular replacement

Phenix Tutorials

Shared 3 years ago

4.2K views

26:28

Phenix Workshop 4/14/2021 (cryo-EM) - Restraints in Phenix

Phenix Tutorials

Shared 3 years ago

1.4K views

1:02:09

Phenix Workshop 4/14/2021 (cryo-EM) - Model validation

Phenix Tutorials

Shared 3 years ago

1.6K views

1:32:50

Phenix Workshop 4/14/2021 (cryo-EM) - Real Space Refinement

Phenix Tutorials

Shared 3 years ago

6.5K views

1:08:40

Phenix Workshop 4/7/2021 (cryo-EM) - Cryo-EM map improvement

Phenix Tutorials

Shared 3 years ago

5K views

1:23:26

Phenix Workshop 4/7/2021 (cryo-EM) - Automated model building

Phenix Tutorials

Shared 3 years ago

3.6K views

24:51

Phenix Workshop 4/7/2021 (cryo-EM) - Introduction to Phenix

Phenix Tutorials

Shared 3 years ago

2.4K views

21:56

Phenix Workshop 11/17/2020 (Xtallography) - Introduction to Phenix

Phenix Tutorials

Shared 4 years ago

2K views

1:46:41

Phenix Workshop 11/18/2020 (Xtallography) - Refinement

Phenix Tutorials

Shared 4 years ago

4.5K views

54:37

Phenix Workshop 11/18/2020 (Xtallography) - Ligands and restraints

Phenix Tutorials

Shared 4 years ago

841 views

36:33

Phenix Workshop 11/18/2020 (Xtallography) - Model validation

Phenix Tutorials

Shared 4 years ago

636 views

40:55

Phenix Workshop 11/18/2020 (Xtallography) - Q&A

Phenix Tutorials

Shared 4 years ago

344 views

19:02

Phenix Workshop 11/17/2020 (Xtallography) - Q&A

Phenix Tutorials

Shared 4 years ago

288 views

1:18:55

Phenix Workshop 11/17/2020 (Xtallography) - Top tips for molecular replacement

Phenix Tutorials

Shared 4 years ago

5.1K views

1:32:00

Phenix Workshop 11/17/2020 (Xtallography) - Experimental Phasing and model building

Phenix Tutorials

Shared 4 years ago

1.4K views

25:31

Phenix User Workshop 9/15/2020 - Introduction to Phenix

Phenix Tutorials

Shared 4 years ago

1.2K views

1:26:47

Phenix User Workshop 9/15/2020 - Cryo-EM map improvement

Phenix Tutorials

Shared 4 years ago

4.3K views

57:59

Phenix User Workshop 9/15/2020 - Automated model building

Phenix Tutorials

Shared 4 years ago

1.2K views

21:47

Phenix User Workshop 9/15/2020 - Q/A sesseion

Phenix Tutorials

Shared 4 years ago

231 views

1:29:21

Phenix User Workshop 9/16/2020 - phenix.real_space_refine

Phenix Tutorials

Shared 4 years ago

948 views

31:55

Phenix User Workshop 9/16/2020 - Ligands in refinement

Phenix Tutorials

Shared 4 years ago

1.6K views

59:24

Phenix User Workshop 9/16/2020 - Validation

Phenix Tutorials

Shared 4 years ago

514 views

30:57

Phenix User Workshop 9/16/2020 - Q&A

Phenix Tutorials

Shared 4 years ago

204 views

5:12

Density modification for cryo-EM maps

Phenix Tutorials

Shared 4 years ago

4.4K views

5:27

How to run real-space-refine

Phenix Tutorials

Shared 6 years ago

10K views

6:23

How to use secondary structure restraints

Phenix Tutorials

Shared 6 years ago

3.1K views

5:46

How to use multiple refinement strategies and apply them to selected parts of a model

Phenix Tutorials

Shared 6 years ago

2.9K views

6:00

Simulate a SAD experiment with phenix.plan_sad_experiment

Phenix Tutorials

Shared 6 years ago

1.5K views

5:33

Automatic map interpretation with map_to_model

Phenix Tutorials

Shared 6 years ago

8.6K views

7:31

Scaling and merging anomalous data

Phenix Tutorials

Shared 6 years ago

1.8K views

6:05

Automated map sharpening with phenix.autosharpen

Phenix Tutorials

Shared 6 years ago

5.2K views

5:48

Fitting ligands into density with phenix.ligandfit

Phenix Tutorials

Shared 6 years ago

5.6K views

8:23

Advanced Tutorial phenix.xtriage - Space Group Identification, Ice rings & Wilson Plot

Phenix Tutorials

Shared 6 years ago

2.6K views

6:08

Advanced Tutorial phenix.xtriage - Checking for twinning

Phenix Tutorials

Shared 6 years ago

2.1K views

4:55

Advanced Tutorial phenix.xtriage - translational NCS (tNCS)

Phenix Tutorials

Shared 6 years ago

3.8K views

6:49

Checking data quality with phenix.xtriage

Phenix Tutorials

Shared 6 years ago

3.4K views

5:24

Automated model building with Phenix AutoBuild

Phenix Tutorials

Shared 6 years ago

5.7K views

4:49

Mini-lecture: Density modification

Phenix Tutorials

Shared 6 years ago

2.1K views

8:17

SAD phasing using AutoSol

Phenix Tutorials

Shared 6 years ago

4.2K views

22:12

Introduction to interactive low-resolution model building with ISOLDE

Phenix Tutorials

Shared 7 years ago

8.3K views

4:57

MolProbity: All atom contacts tutorial

Phenix Tutorials

Shared 7 years ago

2.1K views

9:34

How to run MolProbity (web interface and Phenix GUI)

Phenix Tutorials

Shared 7 years ago

5.1K views

5:50

Overview of cryo-EM tools in Phenix

Phenix Tutorials

Shared 7 years ago

6.6K views

8:08

How to run Structure Comparison

Phenix Tutorials

Shared 7 years ago

2.6K views